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A healthy proteome is critical for every organism. Cells constantly need to monitor their proteins and respond to physiological and pathological conditions that perturb the delicate balance between protein synthesis, folding and degradation. In the endoplasmic reticulum (ER), the protein-folding homeostasis is surveyed by a conserved signaling network called the unfolded protein response (UPR). The main purpose of the UPR is to adjust the ER’s folding capacity. How sensors and transducers detect protein-folding problems and mount an appropriate response is a major open question.
In my lab, we seek to understand the UPR at a mechanistic level. We combine cell biology and biochemistry to dissect how cells maintain a protein-folding homeostasis in the ER. Using next generation sequencing and proteomic approaches, we obtain global information on the molecular components regulating ER-quality control. We then reconstitute these processes biochemically and apply structural methods to dissect their working principles at atomic resolution. Our long-term goal is to use the mechanistic insights derived from these approaches to restore protein homeostasis in variety human diseases caused by protein misfolding.
Elif Karagöz majored Molecular Biology and Genetics with a minor in Chemistry at the Middle East Technical University in Turkey. She got her Master’s degree in Molecular Biology at the Max Planck Research School in Göttingen. After completing her PhD at Utrecht University in the group of Stefan Rüdiger, she did a postdoc at Peter Walter’s lab at the University of California San Francisco.
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The UPR sensors directly detect unfolded proteins accumulating in the ER as activating ligands. ER-chaperones also bind the UPR sensors and regulate their activation/deactivation dynamics. In my lab, we dissect how the interplay among unfolded proteins, sensors and chaperones tunes the UPR using biochemical, structural, and cell biology approaches.
Protein synthesis and folding is tightly coupled to allow error-free assembly of the proteome. Posttranscriptional regulation provides rapid and reversible means for tuning protein synthesis, yet the mechanisms regulating the fate of ER-targeted mRNAs during protein folding stress remain largely unknown. To this end, we aim to reveal how translation and stability of ER-targeted mRNAs are regulated to maintain ER homeostasis.
Aleksandra Anisimova
PhD Student +43 1 4277 61653
Room: 3.502
Sascha Gratzl
PhD Student +43 1 4277 61653
Room: 3.507
Harald Hornegger
PhD Student +43 1 4277 61653
Room: 3.507
Arda Kara
Bachelor Student +43 1 4277 61626
Room: 3.507
Elif Karagöz
Group Leader +43 1 4277 61635
Room: 3.609
Paulina Kettel
PhD Student +43 1 4277 61653
Room: 3.507
Milica Mihailovic
PhD Student +43 1 4277 61635
Room: 3.502
Anastasia Okun
PhD Student +43 1 4277 61653
Room: 3.507
Sabina Omerbegovic
Scientist
Room: 0.000
Grzegorz Scibisz
PhD Student +43 1 4277 61653
Room: 3.507
Optimized infrared photoactivatable ribonucleoside-enhanced crosslinking and immunoprecipitation (IR-PAR-CLIP) protocol identifies novel IGF2BP3-interacting RNAs in colon cancer cells.
Anisimova Aleksandra S, Karagöz G Elif
Shuffled ATG8 interacting motifs form an ancestral bridge between UFMylation and autophagy.
Picchianti Lorenzo, Sánchez de Medina Hernández Víctor, Zhan Ni, Irwin Nicholas At, Groh Roan, Stephani Madlen, Hornegger Harald, Beveridge Rebecca, Sawa-Makarska Justyna, Lendl Thomas, Grujic Nenad, Naumann Christin, Martens Sascha, Richards Thomas A, Clausen Tim, Ramundo Silvia, Karagöz G Elif, Dagdas Yasin
The unfolded protein response and endoplasmic reticulum protein targeting machineries converge on the stress sensor IRE1.
Acosta-Alvear Diego, Karagöz G Elif, Fröhlich Florian, Li Han, Walther Tobias C, Walter Peter