Gentrius: Generating Trees Compatible With a Set of Unrooted Subtrees and its Application to Phylogenetic Terraces.
Chernomor Olga, Elgert Christiane, von Haeseler Arndt
A novel approach for in vivo DNA footprinting using short double-stranded cell-free DNA from plasma.
Müller Jan, Hartwig Christina, Sonntag Mirko, Bitzer Lisa, Adelmann Christopher, Vainshtein Yevhen, Glanz Karolina, Decker Sebastian O, Brenner Thorsten, Weber Georg F, von Haeseler Arndt, Sohn Kai
Splice_sim: a nucleotide conversion-enabled RNA-seq simulation and evaluation framework.
Popitsch Niko, Neumann Tobias, von Haeseler Arndt, Ameres Stefan L
Cerebral organoids display dynamic clonal growth and tunable tissue replenishment.
Lindenhofer Dominik, Haendeler Simon, Esk Christopher, Littleboy Jamie B, Brunet Avalos Clarisse, Naas Julia, Pflug Florian G, van de Ven Eline G P, Reumann Daniel, Baffet Alexandre D, von Haeseler Arndt, Knoblich Jürgen A
Neutral competition explains the clonal composition of neural organoids.
Pflug Florian G, Haendeler Simon, Esk Christopher, Lindenhofer Dominik, Knoblich Jürgen A, von Haeseler Arndt
Critical Growth of Cerebral Tissue in Organoids: Theory and Experiments.
Kiselev Egor I, Pflug Florian, von Haeseler Arndt
ModelRevelator: Fast phylogenetic model estimation via deep learning.
Burgstaller-Muehlbacher Sebastian, Crotty Stephen M, Schmidt Heiko A, Reden Franziska, Drucks Tamara, von Haeseler Arndt
SVhound: detection of regions that harbor yet undetected structural variation.
Paulin Luis F, Raveendran Muthuswamy, Harris R Alan, Rogers Jeffrey, von Haeseler Arndt, Sedlazeck Fritz J
Molecular archaeology of human cognitive traits.
Kaczanowska Joanna, Ganglberger Florian, Chernomor Olga, Kargl Dominic, Galik Bence, Hess Andreas, Moodley Yoshan, von Haeseler Arndt, Bühler Katja, Haubensak Wulf
Gruffi: an algorithm for computational removal of stressed cells from brain organoid transcriptomic datasets.
Vértesy Ábel, Eichmüller Oliver L, Naas Julia, Novatchkova Maria, Esk Christopher, Balmaña Meritxell, Ladstaetter Sabrina, Bock Christoph, von Haeseler Arndt, Knoblich Juergen A
NMD is required for timely cell fate transitions by fine-tuning gene expression and regulating translation.
Huth Michelle, Santini Laura, Galimberti Elena, Ramesmayer Julia, Titz-Teixeira Fabian, Sehlke Robert, Oberhuemer Michael, Stummer Sarah, Herzog Veronika, Garmhausen Marius, Romeike Merrit, Chugunova Anastasia, Leesch Friederike, Holcik Laurenz, Weipoltshammer Klara, Lackner Andreas, Schoefer Christian, von Haeseler Arndt, Buecker Christa, Pauli Andrea, Ameres Stefan L, Smith Austin, Beyer Andreas, Leeb Martin
It Is Just a Matter of Time: Balancing Homologous Recombination and Non-homologous End Joining at the rDNA Locus During Meiosis.
Sims Jason, Rabanal Fernando A, Elgert Christiane, von Haeseler Arndt, Schlögelhofer Peter
Culture-Free Detection of Antibiotic Resistance Markers from Native Patient Samples by Hybridization Capture Sequencing.
Ferreira Ines, Lepuschitz Sarah, Beisken Stephan, Fiume Giuseppe, Mrazek Katharina, Frank Bernhard J H, Huber Silke, Knoll Miriam A, von Haeseler Arndt, Materna Arne, Hofstaetter Jochen G, Posch Andreas E, Weinberger Johannes
Predictive Antibiotic Susceptibility Testing by Next-Generation Sequencing for Periprosthetic Joint Infections: Potential and Limitations.
Lüftinger Lukas, Ferreira Ines, Frank Bernhard J H, Beisken Stephan, Weinberger Johannes, von Haeseler Arndt, Rattei Thomas, Hofstaetter Jochen G, Posch Andreas E, Materna Arne
ATM controls meiotic DNA double-strand break formation and recombination and affects synaptonemal complex organization in plants.
Kurzbauer Marie-Therese, Janisiw Michael Peter, Paulin Luis F, Prusén Mota Ignacio, Tomanov Konstantin, Krsicka Ondrej, Haeseler Arndt von, Schubert Veit, Schlögelhofer Peter
Sequencing of the Arabidopsis NOR2 reveals its distinct organization and tissue-specific rRNA ribosomal variants.
Sims Jason, Sestini Giovanni, Elgert Christiane, von Haeseler Arndt, Schlögelhofer Peter
TMT-Opsins differentially modulate medaka brain function in a context-dependent manner.
Fontinha Bruno M, Zekoll Theresa, Al-Rawi Mariam, Gallach Miguel, Reithofer Florian, Barker Alison J, Hofbauer Maximilian, Fischer Ruth M, von Haeseler Arndt, Baier Herwig, Tessmar-Raible Kristin
Timing strains of the marine insect Clunio marinus diverged and persist with gene flow.
Kaiser Tobias S, von Haeseler Arndt, Tessmar-Raible Kristin, Heckel David G
Complex Evolution of Light-Dependent Protochlorophyllide Oxidoreductases in Aerobic Anoxygenic Phototrophs: Origin, Phylogeny, and Function.
Chernomor Olga, Peters Lena, Schneidewind Judith, Loeschcke Anita, Knieps-Grünhagen Esther, Schmitz Fabian, von Lieres Eric, Kutta Roger Jan, Svensson Vera, Jaeger Karl-Erich, Drepper Thomas, von Haeseler Arndt, Krauss Ulrich
A human tissue screen identifies a regulator of ER secretion as a brain-size determinant.
Esk Christopher, Lindenhofer Dominik, Haendeler Simon, Wester Roelof A, Pflug Florian, Schroeder Benoit, Bagley Joshua A, Elling Ulrich, Zuber Johannes, von Haeseler Arndt, Knoblich Jürgen A