MPBoot: fast phylogenetic maximum parsimony tree inference and bootstrap approximation.
Hoang Diep Thi, Vinh Le Sy, Flouri Tomáš, Stamatakis Alexandros, von Haeseler Arndt, Minh Bui Quang
Complex Models of Sequence Evolution Require Accurate Estimators as Exemplified with the Invariable Site Plus Gamma Model.
Nguyen Lam-Tung, von Haeseler Arndt, Minh Bui Quang
UFBoot2: Improving the Ultrafast Bootstrap Approximation.
Hoang Diep Thi, Chernomor Olga, von Haeseler Arndt, Minh Bui Quang, Vinh Le Sy
Thiol-linked alkylation of RNA to assess expression dynamics.
Herzog Veronika A, Reichholf Brian, Neumann Tobias, Rescheneder Philipp, Bhat Pooja, Burkard Thomas R, Wlotzka Wiebke, von Haeseler Arndt, Zuber Johannes, Ameres Stefan L
HIV-1 full-genome phylogenetics of generalized epidemics in sub-Saharan Africa: impact of missing nucleotide characters in next-generation sequences.
Ratmann Oliver, Wymant Chris, Colijn Caroline, Danaviah Siva, Essex M, Frost Simon D W, Gall Astrid, Gaiseitsiwe Simani, Grabowski Mary, Gray Ronald, Guindon Stephane, von Haeseler Arndt, Kaleebu Pontiano, Kendall Michelle, Kozlov Alexey, Manasa Justen, Minh Bui Quang, Moyo Sikhulile, Novitsky Vladimir, Nsubuga Rebecca, Pillay Sureshnee, Quinn Thomas C, Serwadda David, Ssemwanga Deogratius, Stamatakis Alexandros, Trifinopoulos Jana, Wawer Maria, Leigh Brown Andrew, de Oliveira Tulio, Kellam Paul, Pillay Deenan, Fraser Christophe
ModelFinder: fast model selection for accurate phylogenetic estimates.
Kalyaanamoorthy Subha, Minh Bui Quang, Wong Thomas K F, von Haeseler Arndt, Jermiin Lars S
Reversible polymorphism-aware phylogenetic models and their application to tree inference.
Schrempf Dominik, Minh Bui Quang, De Maio Nicola, von Haeseler Arndt, Kosiol Carolin
Next-generation sequencing diagnostics of bacteremia in septic patients.
Grumaz Silke, Stevens Philip, Grumaz Christian, Decker Sebastian O, Weigand Markus A, Hofer Stefan, Brenner Thorsten, von Haeseler Arndt, Sohn Kai
Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices.
Chernomor Olga, von Haeseler Arndt, Minh Bui Quang
W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis.
Trifinopoulos Jana, Nguyen Lam-Tung, von Haeseler Arndt, Minh Bui Quang
Separable Roles for a Caenorhabditis elegans RMI1 Homolog in Promoting and Antagonizing Meiotic Crossovers Ensure Faithful Chromosome Inheritance.
Jagut Marlène, Hamminger Patricia, Woglar Alexander, Millonigg Sophia, Paulin Luis, Mikl Martin, Dello Stritto Maria Rosaria, Tang Lois, Habacher Cornelia, Tam Angela, Gallach Miguel, von Haeseler Arndt, Villeneuve Anne M, Jantsch Verena
A-type lamins bind both hetero- and euchromatin, the latter being regulated by lamina-associated polypeptide 2 alpha.
Gesson Kevin, Rescheneder Philipp, Skoruppa Michael P, von Haeseler Arndt, Dechat Thomas, Foisner Roland
Teaser: Individualized benchmarking and optimization of read mapping results for NGS data.
Smolka Moritz, Rescheneder Philipp, Schatz Michael C, von Haeseler Arndt, Sedlazeck Fritz J
The Candida albicans Histone Acetyltransferase Hat1 Regulates Stress Resistance and Virulence via Distinct Chromatin Assembly Pathways.
Tscherner Michael, Zwolanek Florian, Jenull Sabrina, Sedlazeck Fritz J, Petryshyn Andriy, Frohner Ingrid E, Mavrianos John, Chauhan Neeraj, von Haeseler Arndt, Kuchler Karl
Consequences of Common Topological Rearrangements for Partition Trees in Phylogenomic Inference.
Chernomor Olga, Minh Bui Quang, von Haeseler Arndt
Split diversity in constrained conservation prioritization using integer linear programming.
Chernomor Olga, Minh Bui Quang, Forest Félix, Klaere Steffen, Ingram Travis, Henzinger Monika, von Haeseler Arndt
Decreased expression of endogenous feline leukemia virus in cat lymphomas: a case control study.
Krunic Milica, Ertl Reinhard, Hagen Benedikt, Sedlazeck Fritz J, Hofmann-Lehmann Regina, von Haeseler Arndt, Klein Dieter
Innate immune response to Streptococcus pyogenes depends on the combined activation of TLR13 and TLR2.
Fieber Christina, Janos Marton, Koestler Tina, Gratz Nina, Li Xiao-Dong, Castiglia Virginia, Aberle Marion, Sauert Martina, Wegner Mareike, Alexopoulou Lena, Kirschning Carsten J, Chen Zhijian J, von Haeseler Arndt, Kovarik Pavel
IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.
Nguyen Lam-Tung, Schmidt Heiko A, von Haeseler Arndt, Minh Bui Quang
The phylogenetic likelihood library.
Flouri T, Izquierdo-Carrasco F, Darriba D, Aberer A J, Nguyen L-T, Minh B Q, Von Haeseler A, Stamatakis A