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Poly(ADP-ribose) glycohydrolase coordinates meiotic DNA double-strand break induction and repair independent of its catalytic activity.

2020 Nature communications;11(1):4869.
PMID:  32978394

Janisiw Eva, Raices Marilina, Balmir Fabiola, Paulin Luis F, Baudrimont Antoine, von Haeseler Arndt, Yanowitz Judith L, Jantsch Verena, Silva Nicola

Structure of the space of taboo-free sequences.

2020 Journal of mathematical biology;81(4-5):1029, 1057, 1029-1057.
PMID:  32940748

Manuel Cassius, von Haeseler Arndt

Large-scale assessment of antimicrobial resistance marker databases for genetic phenotype prediction: a systematic review.

2020 The Journal of antimicrobial chemotherapy;75(11):3099, 3108, 3099-3108.
PMID:  32658975

Mahfouz Norhan, Ferreira Inês, Beisken Stephan, von Haeseler Arndt, Posch Andreas E

A compendium of genome-wide sequence reads from NBS (nucleotide binding site) domains of resistance genes in the common potato.

2020 Scientific reports;10(1):11392.
PMID:  32647195

Prakash Celine, Trognitz Friederike Ch, Venhuizen Peter, von Haeseler Arndt, Trognitz Bodo

Distinguishing Felsenstein Zone from Farris Zone Using Neural Networks.

2020 Molecular biology and evolution;37(12):3632, 3641, 3632-3641.
PMID:  32637998

Leuchtenberger Alina F, Crotty Stephen M, Drucks Tamara, Schmidt Heiko A, Burgstaller-Muehlbacher Sebastian, von Haeseler Arndt

Species Identification and Antibiotic Resistance Prediction by Analysis of Whole-Genome Sequence Data by Use of ARESdb: an Analysis of Isolates from the Unyvero Lower Respiratory Tract Infection Trial.

2020 Journal of clinical microbiology;58(7)
PMID:  32295890

Ferreira Ines, Beisken Stephan, Lueftinger Lukas, Weinmaier Thomas, Klein Matthias, Bacher Johannes, Patel Robin, von Haeseler Arndt, Posch Andreas E

A-to-I RNA Editing Uncovers Hidden Signals of Adaptive Genome Evolution in Animals.

2020 Genome biology and evolution;12(4):345, 357, 345-357.
PMID:  32145015

Popitsch Niko, Huber Christian D, Buchumenski Ilana, Eisenberg Eli, Jantsch Michael, von Haeseler Arndt, Gallach Miguel

IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era.

2020 Molecular biology and evolution;37(5):1530, 1534, 1530-1534.
PMID:  32011700

Minh Bui Quang, Schmidt Heiko A, Chernomor Olga, Schrempf Dominik, Woodhams Michael D, von Haeseler Arndt, Lanfear Robert

Insertion Pool Sequencing for Insertional Mutant Analysis in Complex Host-Microbe Interactions.

2019 Current protocols in plant biology;4(3):e20097.
PMID:  31479207

Uhse Simon, Pflug Florian G, von Haeseler Arndt, Djamei Armin

Quantification of experimentally induced nucleotide conversions in high-throughput sequencing datasets.

2019 BMC bioinformatics;20(1):258.
PMID:  31109287

Neumann Tobias, Herzog Veronika A, Muhar Matthias, von Haeseler Arndt, Zuber Johannes, Ameres Stefan L, Rescheneder Philipp

Polymorphism-Aware Species Trees with Advanced Mutation Models, Bootstrap, and Rate Heterogeneity.

2019 Molecular biology and evolution;36(6):1294, 1301, 1294-1301.
PMID:  30825307

Schrempf Dominik, Minh Bui Quang, von Haeseler Arndt, Kosiol Carolin

Combined transcriptome and proteome profiling reveals specific molecular brain signatures for sex, maturation and circalunar clock phase.

2019 eLife;8
PMID:  30767890

Schenk Sven, Bannister Stephanie C, Sedlazeck Fritz J, Anrather Dorothea, Minh Bui Quang, Bileck Andrea, Hartl Markus, von Haeseler Arndt, Gerner Christopher, Raible Florian, Tessmar-Raible Kristin

VARIFI-Web-Based Automatic Variant Identification, Filtering and Annotation of Amplicon Sequencing Data.

2019 Journal of personalized medicine;9(1)
PMID:  30717290

Krunic Milica, Venhuizen Peter, Müllauer Leonhard, Kaserer Bettina, von Haeseler Arndt

The Evolutionary Traceability of a Protein.

2019 Genome biology and evolution;11(2):531, 545, 531-545.
PMID:  30649284

Jain Arpit, Perisa Dominik, Fliedner Fabian, von Haeseler Arndt, Ebersberger Ingo

Accurate detection of complex structural variations using single-molecule sequencing.

2018 Nature methods;15(6):461, 468, 461-468.
PMID:  29713083

Sedlazeck Fritz J, Rescheneder Philipp, Smolka Moritz, Fang Han, Nattestad Maria, von Haeseler Arndt, Schatz Michael C

In vivo insertion pool sequencing identifies virulence factors in a complex fungal-host interaction.

2018 PLoS biology;16(4):e2005129.
PMID:  29684023

Uhse Simon, Pflug Florian G, Stirnberg Alexandra, Ehrlinger Klaus, von Haeseler Arndt, Djamei Armin

TRUmiCount: correctly counting absolute numbers of molecules using unique molecular identifiers.

2018 Bioinformatics (Oxford, England);34(18):3137, 3144, 3137-3144.
PMID:  29672674

Pflug Florian G, von Haeseler Arndt

Unifying the global phylogeny and environmental distribution of ammonia-oxidising archaea based on amoA genes.

2018 Nature communications;9(1):1517.
PMID:  29666365

Alves Ricardo J Eloy, Minh Bui Quang, Urich Tim, von Haeseler Arndt, Schleper Christa

SLAM-seq defines direct gene-regulatory functions of the BRD4-MYC axis.

2018 Science (New York, N.Y.);360(6390):800, 805, 800-805.
PMID:  29622725

Muhar Matthias, Ebert Anja, Neumann Tobias, Umkehrer Christian, Jude Julian, Wieshofer Corinna, Rescheneder Philipp, Lipp Jesse J, Herzog Veronika A, Reichholf Brian, Cisneros David A, Hoffmann Thomas, Schlapansky Moritz F, Bhat Pooja, von Haeseler Arndt, Köcher Thomas, Obenauf Anna C, Popow Johannes, Ameres Stefan L, Zuber Johannes

Germline Variants in the POT1-Gene in High-Risk Melanoma Patients in Austria.

2018 G3 (Bethesda, Md.);8(5):1475, 1480, 1475-1480.
PMID:  29523635

Müller Christoph, Krunic Milica, Wendt Judith, von Haeseler Arndt, Okamoto Ichiro

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