Atomistic mechanism of the constitutive activation of PDGFRA via its transmembrane domain.
Polyansky Anton A, Bocharov Eduard V, Velghe Amélie I, Kuznetsov Andrey S, Bocharova Olga V, Urban Anatoly S, Arseniev Alexander S, Zagrovic Bojan, Demoulin Jean-Baptiste, Efremov Roman G
RNA-protein interactions in an unstructured context.
Zagrovic Bojan, Bartonek Lukas, Polyansky Anton A
Self-Consistent Framework Connecting Experimental Proxies of Protein Dynamics with Configurational Entropy.
Fleck Markus, Polyansky Anton A, Zagrovic Bojan
Dependence of Binding Free Energies between RNA Nucleobases and Protein Side Chains on Local Dielectric Properties.
de Ruiter Anita, Polyansky Anton A, Zagrovic Bojan
mRNA/protein sequence complementarity and its determinants: The impact of affinity scales.
Bartonek Lukas, Zagrovic Bojan
Fuento: functional enrichment for bioinformatics.
Weichselbaum David, Zagrovic Bojan, Polyansky Anton A
Mechanism of cargo-directed Atg8 conjugation during selective autophagy.
Fracchiolla Dorotea, Sawa-Makarska Justyna, Zens Bettina, Ruiter Anita de, Zaffagnini Gabriele, Brezovich Andrea, Romanov Julia, Runggatscher Kathrin, Kraft Claudine, Zagrovic Bojan, Martens Sascha
Structural mechanism for the recognition and ubiquitination of a single nucleosome residue by Rad6-Bre1.
Gallego Laura D, Ghodgaonkar Steger Medini, Polyansky Anton A, Schubert Tobias, Zagrovic Bojan, Zheng Ning, Clausen Tim, Herzog Franz, Köhler Alwin
A code within a code: how codons influence mRNA stability.
Martinez Javier, Zagrovic Bojan
Inosine Nucleobase Acts as Guanine in Interactions with Protein Side Chains.
Hajnic Matea, Ruiter Anita de, Polyansky Anton A, Zagrovic Bojan
Effect of Oxidative Damage on the Stability and Dimerization of Superoxide Dismutase 1.
Petrov Drazen, Daura Xavier, Zagrovic Bojan
PARENT: A Parallel Software Suite for the Calculation of Configurational Entropy in Biomolecular Systems.
Fleck Markus, Polyansky Anton A, Zagrovic Bojan
Interaction preferences between nucleobase mimetics and amino acids in aqueous solutions.
Hajnic Matea, Osorio Juan I, Zagrovic Bojan
Malleable nature of mRNA-protein compositional complementarity and its functional significance.
Hlevnjak Mario, Zagrovic Bojan
Absolute binding-free energies between standard RNA/DNA nucleobases and amino-acid sidechain analogs in different environments.
de Ruiter Anita, Zagrovic Bojan
On the Contribution of Protein Spatial Organization to the Physicochemical Interconnection between Proteins and Their Cognate mRNAs.
Beier Andreas, Zagrovic Bojan, Polyansky Anton A
Computational analysis of amino acids and their sidechain analogs in crowded solutions of RNA nucleobases with implications for the mRNA-protein complementarity hypothesis.
Hajnic Matea, Osorio Juan Iregui, Zagrovic Bojan
Are current atomistic force fields accurate enough to study proteins in crowded environments?
Petrov Drazen, Zagrovic Bojan
Dependence of protein crystal stability on residue charge states and ion content of crystal solvent.
Kuzmanic Antonija, Zagrovic Bojan