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Processing and Visualization of Protec-Seq Data for the Generation of Calibrated, Genome-Wide Double Double-Strand Break (dDSB) Maps.

2025 Methods in molecular biology (Clifton, N.J.);2856:401, 418, 401-418.
PMID:  39283465

Chen Doris, Xaver Martin, Klein Franz

Synthesis of a C/H Labeled Building Block to Probe the Phosphotyrosine Interactome Using Biomolecular NMR Spectroscopy.

2025 Chembiochem : a European journal of chemical biology;26(1):e202400663.
PMID:  39271462

Kratzwald Sarah, Schwarz Thomas C, Ledolter Karin, Hlavac Matus, Felkl Manuel, Becker Christian F W, Konrat Robert, Lichtenecker Roman J

An autocrine synergistic desmin-SPARC network promotes cardiomyogenesis in cardiac stem cells.

2024 Cells & development;181:203990.
PMID:  39734020

Leitner Lucia, Schultheis Martina, Hofstetter Franziska, Rudolf Claudia, Fuchs Christiane, Kizner Valeria, Fiedler Kerstin, Konrad Marie-Therese, Höbaus Julia, Genini Marco, Kober Julia, Ableitner Elisabeth, Gmaschitz Teresa, Walder Diana, Weitzer Georg

Catching a wave: On the suitability of traveling-wave solutions in epidemiological modeling.

2024 Theoretical population biology;162:1, 12, 1-12.
PMID:  39733976

Langmüller Anna M, Hermisson Joachim, Murdock Courtney C, Messer Philipp W

Rnalib: a Python library for custom transcriptomics analyses.

2024 Bioinformatics (Oxford, England);41(1)
PMID:  39718766

Popitsch Niko, Ameres Stefan L

At-RS31 orchestrates hierarchical cross-regulation of splicing factors and integrates alternative splicing with TOR-ABA pathways.

2024 bioRxiv : the preprint server for biology
PMID:  39677721

Köster Tino, Venhuizen Peter, Lewinski Martin, Petrillo Ezequiel, Marquez Yamile, Fuchs Armin, Ray Debashish, Nimeth Barbara A, Riegler Stefan, Franzmeier Sophie, Zheng Hong, Hughes Timothy, Morris Quaid, Barta Andrea, Staiger Dorothee, Kalyna Maria

DMSO might impact ligand binding, capsid stability, and RNA interaction in viral preparations.

2024 Scientific reports;14(1):30408.
PMID:  39639094

Wald Jiri, Goessweiner-Mohr Nikolaus, Real-Hohn Antonio, Blaas Dieter, Marlovits Thomas C

Unveiling the bacterial diversity and potential of the Avicennia marina ecosystem for enhancing plant resilience to saline conditions.

2024 Environmental microbiome;19(1):101.
PMID:  39633419

Alghamdi Amal Khalaf, Parween Sabiha, Hirt Heribert, Saad Maged M

Targeting n-myristoyltransferases promotes a pan-Mammarenavirus inhibition through the degradation of the Z matrix protein.

2024 PLoS pathogens;20(12):e1012715.
PMID:  39625987

Carnec Xavier, Borges-Cardoso Virginie, Reynard Stéphanie, Kowalski Heinrich, Gaillard Jean-Charles, Mateo Mathieu, Armengaud Jean, Baize Sylvain

Seipin governs phosphatidic acid homeostasis at the inner nuclear membrane.

2024 Nature communications;15(1):10486.
PMID:  39622802

Romanauska Anete, Stankunas Edvinas, Schuldiner Maya, Köhler Alwin

An expanded view of cell competition.

2024 Development (Cambridge, England);151(22)
PMID:  39560103

Khandekar Ameya, Ellis Stephanie J

Molecular profiles, sources and lineage restrictions of stem cells in an annelid regeneration model.

2024 Nature communications;15(1):9882.
PMID:  39557833

Stockinger Alexander W, Adelmann Leonie, Fahrenberger Martin, Ruta Christine, Özpolat B Duygu, Milivojev Nadja, Balavoine Guillaume, Raible Florian

STK19 drives transcription-coupled repair by stimulating repair complex stability, RNA Pol II ubiquitylation, and TFIIH recruitment.

2024 Molecular cell;84(24):4740, 4757.e12, 4740-4757.e12.
PMID:  39547223

Ramadhin Anisha R, Lee Shun-Hsiao, Zhou Di, Salmazo Anita, Gonzalo-Hansen Camila, van Sluis Marjolein, Blom Cindy M A, Janssens Roel C, Raams Anja, Dekkers Dick, Bezstarosti Karel, Slade Dea, Vermeulen Wim, Pines Alex, Demmers Jeroen A A, Bernecky Carrie, Sixma Titia K, Marteijn Jurgen A

Corrigendum to "The Role of ATG9 Vesicles in Autophagosome Biogenesis" [J. Mol. Biol. 436(15) (2024) 168489].

2024 Journal of molecular biology;436(23):168849.
PMID:  39532057

Holzer Elisabeth, Martens Sascha, Tulli Susanna

UCBShift 2.0: Bridging the Gap from Backbone to Side Chain Protein Chemical Shift Prediction for Protein Structures.

2024 Journal of the American Chemical Society;146(46):31733, 31745, 31733-31745.
PMID:  39531038

Ptaszek Aleksandra L, Li Jie, Konrat Robert, Platzer Gerald, Head-Gordon Teresa

The synthesis of specifically isotope labelled fluorotryptophan and its use in mammalian cell-based protein expression for F-NMR applications.

2024 Chemical communications (Cambridge, England);60(96):14188, 14191, 14188-14191.
PMID:  39512115

Toscano Giorgia, Rosati Martina, Barbieri Letizia, Maier Katharina, Banci Lucia, Luchinat Enrico, Konrat Robert, Lichtenecker Roman J

Recruitment of autophagy initiator TAX1BP1 advances aggrephagy from cargo collection to sequestration.

2024 The EMBO journal;43(23):5910, 5940, 5910-5940.
PMID:  39448883

Bauer Bernd, Idinger Jonas, Schuschnig Martina, Ferrari Luca, Martens Sascha

Gentrius: Generating Trees Compatible With a Set of Unrooted Subtrees and its Application to Phylogenetic Terraces.

2024 Molecular biology and evolution;41(11)
PMID:  39431557

Chernomor Olga, Elgert Christiane, von Haeseler Arndt

IGF2BP1 phosphorylation in the disordered linkers regulates ribonucleoprotein condensate formation and RNA metabolism.

2024 Nature communications;15(1):9054.
PMID:  39426983

Hornegger Harald, Anisimova Aleksandra S, Muratovic Adnan, Bourgeois Benjamin, Spinetti Elena, Niedermoser Isabell, Covino Roberto, Madl Tobias, Karagöz G Elif

Disentangling the Complexity in Protein Complexes Using Complementary Isotope-Labeling and Multiple-Receiver NMR Spectroscopy.

2024 Journal of the American Chemical Society;146(41):27983, 27987, 27983-27987.
PMID:  39374115

Knödlstorfer Sonja, Schiavina Marco, Rodella Maria Anna, Ledolter Karin, Konrat Robert, Pierattelli Roberta, Felli Isabella C

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