Search Results

Long non-coding RNAs contribute to DNA damage resistance in Arabidopsis thaliana.

2023 GENETICS
PMID: 37467473

Durut, Nathalie; Kornienko, Aleksandra E; Schmidt, Heiko A; Lettner, Nicole; Donà, Mattia; Nordborg, Magnus; Scheid, Ortrun Mittelsten

Genome-wide screening in pluripotent cells identifies Mtf1 as a suppressor of mutant huntingtin toxicity.

2023 NAT COMMUN;14(1):3962.
PMID: 37407555

Ferlazzo, Giorgia Maria; Gambetta, Anna Maria; Amato, Sonia; Cannizzaro, Noemi; Angiolillo, Silvia; Arboit, Mattia; Diamante, Linda; Carbognin, Elena; Romani, Patrizia; La Torre, Federico; Galimberti, Elena; Pflug, Florian; Luoni, Mirko; Giannelli, Serena; Pepe, Giuseppe; Capocci, Luca; Di Pardo, Alba; Vanzani, Paola; Zennaro, Lucio; Broccoli, Vania; Leeb, Martin; Moro, Enrico; Maglione, Vittorio; Martello, Graziano

The ADAR1 editome reveals drivers of editing-specificity for ADAR1-isoforms.

2023 NUCLEIC ACIDS RES;51(9):4191-4207.
PMID: 37026479

Kleinova, Renata; Rajendra, Vinod; Leuchtenberger, Alina F; Lo Giudice, Claudio; Vesely, Cornelia; Kapoor, Utkarsh; Tanzer, Andrea; Derdak, Sophia; Picardi, Ernesto; Jantsch, Michael F

Hypoxia hits APOL1 in the kidney.

2023 Kidney international.
PMID: 37098381

Grampp, Steffen; Krüger, René; Lauer, Victoria; Uebel, Sebastian; Knaup, Karl X; Naas, Julia; Höffken, Verena; Weide, Thomas; Schiffer, Mario; Naas, Stephanie; Schödel, Johannes

SVhound: detection of regions that harbor yet undetected structural variation.

2023 BMC BIOINFORMATICS;24(1):23.
PMID: 36670361

Paulin, Luis F; Raveendran, Muthuswamy; Harris, R Alan; Rogers, Jeffrey; von Haeseler, Arndt; Sedlazeck, Fritz J

An ancestral Wnt-Brachyury feedback loop in axial patterning and recruitment of mesoderm-determining target genes.

2022 Nature Ecology & Evolution;6(12):1921-1939.
PMID: 36396969

Schwaiger, Michaela; Andrikou, Carmen; Dnyansagar, Rohit; Murguia, Patricio Ferrer; Paganos, Periklis; Voronov, Danila; Zimmermann, Bob; Lebedeva, Tatiana; Schmidt, Heiko A; Genikhovich, Grigory; Benvenuto, Giovanna; Arnone, Maria Ina; Technau, Ulrich

Gruffi: an algorithm for computational removal of stressed cells from brain organoid transcriptomic datasets.

2022 EMBO J;41(17):e111118.
PMID: 35919947

Vértesy, Ábel; Eichmüller, Oliver L; Naas, Julia; Novatchkova, Maria; Esk, Christopher; Balmaña, Meritxell; Ladstaetter, Sabrina; Bock, Christoph; von Haeseler, Arndt; Knoblich, Juergen A

Molecular archaeology of human cognitive traits.

2022 Cell Rep;40(9):111287.
PMID: 36044840

Kaczanowska, Joanna; Ganglberger, Florian; Chernomor, Olga; Kargl, Dominic; Galik, Bence; Hess, Andreas; Moodley, Yoshan; von Haeseler, Arndt; Bühler, Katja; Haubensak, Wulf

Deep learning from phylogenies to uncover the epidemiological dynamics of outbreaks.

2022 NAT COMMUN;13(1):3896.
PMID: 35794110

Voznica, J; Zhukova, A; Boskova, V; Saulnier, E; Lemoine, F; Moslonka-Lefebvre, M; Gascuel, O

Comprehensive Analysis of Nasal Polyps Reveals a More Pronounced Type 2 Transcriptomic Profile of Epithelial Cells and Mast Cells in Aspirin-Exacerbated Respiratory Disease.

2022 Frontiers in immunology;13:850494.
PMID: 35418991

Bangert, Christine; Villazala-Merino, Sergio; Fahrenberger, Martin; Krausgruber, Thomas; Bauer, Wolfgang M; Stanek, Victoria; Campion, Nicholas James; Bartosik, Tina; Quint, Tamara; Regelsberger, Guenther; Niederberger-Leppin, Verena; Bock, Christoph; Schneider, Sven; Eckl-Dorna, Julia

NMD is required for timely cell fate transitions by fine-tuning gene expression and regulating translation.

2022 GENE DEV;36(5-6):348-367.
PMID: 35241478

Huth, Michelle; Santini, Laura; Galimberti, Elena; Ramesmayer, Julia; Titz-Teixeira, Fabian; Sehlke, Robert; Oberhuemer, Michael; Stummer, Sarah; Herzog, Veronika; Garmhausen, Marius; Romeike, Merrit; Chugunova, Anastasia; Leesch, Friederike; Holcik, Laurenz; Weipoltshammer, Klara; Lackner, Andreas; Schoefer, Christian; von Haeseler, Arndt; Buecker, Christa; Pauli, Andrea; Ameres, Stefan L; Smith, Austin; Beyer, Andreas; Leeb, Martin

Melanopsin elevates locomotor activity during the wake state of the diurnal zebrafish.

2022 EMBO REP:e51528.
PMID: 35233929

Dekens, Marcus P S; Fontinha, Bruno M; Gallach, Miguel; Pflügler, Sandra; Tessmar-Raible, Kristin

Comparing partitioned models to mixture models: Do information criteria apply?

2022 SYST BIOL
PMID: 35041002

Crotty, Stephen M; Holland, Barbara R

ATM controls meiotic DNA double-strand break formation and recombination and affects synaptonemal complex organization in plants.

2021 PLANT CELL;33(5):1633-1656.
PMID: 33659989

Kurzbauer, Marie-Therese; Janisiw, Michael Peter; Paulin, Luis F; Prusén Mota, Ignacio; Tomanov, Konstantin; Krsicka, Ondrej; Haeseler, Arndt von; Schubert, Veit; Schlögelhofer, Peter

It Is Just a Matter of Time: Balancing Homologous Recombination and Non-homologous End Joining at the rDNA Locus During Meiosis.

2021 Front Plant Sci;12:773052.
PMID: 34777453

Sims, Jason; Rabanal, Fernando A; Elgert, Christiane; von Haeseler, Arndt; Schlögelhofer, Peter

It Is Just a Matter of Time: Balancing Homologous Recombination and Non-homologous End Joining at the rDNA Locus During Meiosis

2021 Front Plant Sci

Sims, Jason; Rabanal, Fernando A.; Elgert, Christiane; Haeseler, Arndt von; Schlögelhofer, Peter

Predictive Antibiotic Susceptibility Testing by Next-Generation Sequencing for Periprosthetic Joint Infections: Potential and Limitations.

2021 Biomedicines.;9(8)
PMID: 34440114

Lüftinger, Lukas; Ferreira, Ines; Frank, Bernhard J H; Beisken, Stephan; Weinberger, Johannes; von Haeseler, Arndt; Rattei, Thomas; Hofstaetter, Jochen G; Posch, Andreas E; Materna, Arne

Culture-Free Detection of Antibiotic Resistance Markers from Native Patient Samples by Hybridization Capture Sequencing.

2021 Microorganisms;9(8)
PMID: 34442751

Ferreira, Ines; Lepuschitz, Sarah; Beisken, Stephan; Fiume, Giuseppe; Mrazek, Katharina; Frank, Bernhard J H; Huber, Silke; Knoll, Miriam A; von Haeseler, Arndt; Materna, Arne; Hofstaetter, Jochen G; Posch, Andreas E; Weinberger, Johannes

Characterization of cephalic and non-cephalic sensory cell types provides insight into joint photo- and mechanoreceptor evolution.

2021 eLife;10
PMID: 34350831

Revilla-I-Domingo, Roger; Rajan, Vinoth Babu Veedin; Waldherr, Monika; Prohaczka, Günther; Musset, Hugo; Orel, Lukas; Gerrard, Elliot; Smolka, Moritz; Stockinger, Alexander; Farlik, Matthias; Lucas, Robert J; Raible, Florian; Tessmar-Raible, Kristin

Want to track pandemic variants faster? Fix the bioinformatics bottleneck.

2021 NATURE;591(7848):30-33.
PMID: 33649511

Hodcroft, Emma B; De Maio, Nicola; Lanfear, Rob; MacCannell, Duncan R; Minh, Bui Quang; Schmidt, Heiko A; Stamatakis, Alexandros; Goldman, Nick; Dessimoz, Christophe

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